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Download NeEstimator

NeEstimator V2.1 estimates contemporary effective population size (Ne) using multi-locus diploid genotypes from population samples.

Version 2.1 (32-bit) for Mac, Linux and PC.

Download “NeEstimator V2.1 (32-bit for Mac, Linux and PC)” Zip+Folder_32_bit_191125.zip – Downloaded 8957 times – 2.76 MB

Version 2.1 (64-bit) for Mac, Linux and PC.

Download “NeEstimator V2.1 (64-bit for Mac, Linux and PC)” Zip+Folder_64_bit_191125.zip – Downloaded 14445 times – 2.77 MB

Download SHAZA

The SHAZA software  assists in matching pairs of microsatellite genotypes in mark recapture studies. It distinguishes rare matches from those that occur by chance and was specifically designed for studies involving many many thousands of genotyped individuals.

Installation files

You can download a zip file most suitable for your computer platform:
Download “SHAZA for Windows” shaza_win_201(1).zip – Downloaded 8541 times – 324.63 KB Download “SHAZA for Mac OS” shaza_mac_202.zip – Downloaded 7348 times – 153.55 KB Download “SHAZA for Linux” shaza_linux_201.zip – Downloaded 7181 times – 315.58 KB

These installation zips include the following files:

File name	Description
shaza_manual_201.pdf	User manual
fish_example.dat	Example file – Base pair
frequency_one.dat	Example file – Allele frequency one
frequency_two.dat	Example file -Allele frequecy two
shaza *	Intel executable file

* Windows XP has .exe extension

Source code

The sourcecode is also available for download:
SHAZA source 2.6 (ZIP, 157 kB)

The sourcecode includes the following files:

File name	Description
README	Compile information for source code
Makefile	Makefile for compilation
C Source_code	Source code

If you have difficulty accessing files from this website please Contact Us.

Download LocusEater

LocusEater is a set of programs (ie includes Shadowboxer) to optimise experimental design and microsatellite multiplexing strategies for genetic mark-recapture programs.

The following file includes the LocusEater program (version 1.4) and the online help files.
Download “LocusEater” LocusEaterSetup(1).exe – Downloaded 2979 times – 605.82 KB

Download NeOGen